Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CX3CL1P78423 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.5■□□□□ 0.71
CX3CL1P78423 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CX3CL1P78423 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CX3CL1P78423 AC060814.1-201ENST00000554326 538 ntBASIC19.5■□□□□ 0.71
CX3CL1P78423 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CX3CL1P78423 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CX3CL1P78423 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CX3CL1P78423 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.49■□□□□ 0.71
CX3CL1P78423 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.49■□□□□ 0.71
CX3CL1P78423 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CX3CL1P78423 AC022413.1-201ENST00000624602 984 ntBASIC19.49■□□□□ 0.71
CX3CL1P78423 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CX3CL1P78423 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CX3CL1P78423 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CX3CL1P78423 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CX3CL1P78423 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.48■□□□□ 0.71
CX3CL1P78423 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.48■□□□□ 0.71
CX3CL1P78423 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CL1P78423 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CL1P78423 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.48■□□□□ 0.71
CX3CL1P78423 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CX3CL1P78423 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
CX3CL1P78423 AL359504.2-201ENST00000605506 1601 ntBASIC19.47■□□□□ 0.71
CX3CL1P78423 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CX3CL1P78423 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CX3CL1P78423 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CX3CL1P78423 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CX3CL1P78423 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.47■□□□□ 0.71
CX3CL1P78423 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CL1P78423 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CL1P78423 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CL1P78423 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.46■□□□□ 0.71
CX3CL1P78423 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
CX3CL1P78423 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CX3CL1P78423 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CL1P78423 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CL1P78423 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CX3CL1P78423 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.45■□□□□ 0.7
CX3CL1P78423 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CL1P78423 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CL1P78423 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.45■□□□□ 0.7
CX3CL1P78423 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CX3CL1P78423 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CL1P78423 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.44■□□□□ 0.7
CX3CL1P78423 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CL1P78423 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CL1P78423 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CX3CL1P78423 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CL1P78423 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CX3CL1P78423 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CX3CL1P78423 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.43■□□□□ 0.7
CX3CL1P78423 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CX3CL1P78423 AL157400.5-201ENST00000507624 621 ntBASIC19.43■□□□□ 0.7
CX3CL1P78423 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CX3CL1P78423 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
CX3CL1P78423 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CX3CL1P78423 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CL1P78423 GPX1-201ENST00000419349 1106 ntBASIC19.42■□□□□ 0.7
CX3CL1P78423 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CL1P78423 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CX3CL1P78423 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CL1P78423 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.41■□□□□ 0.7
CX3CL1P78423 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CL1P78423 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.41■□□□□ 0.7
CX3CL1P78423 ABHD17AP3-201ENST00000503096 1137 ntBASIC19.41■□□□□ 0.7
CX3CL1P78423 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CL1P78423 AC092296.2-201ENST00000589470 999 ntBASIC19.41■□□□□ 0.7
CX3CL1P78423 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.41■□□□□ 0.7
CX3CL1P78423 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CL1P78423 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CX3CL1P78423 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.41■□□□□ 0.7
CX3CL1P78423 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.41■□□□□ 0.7
CX3CL1P78423 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CX3CL1P78423 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CX3CL1P78423 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.4■□□□□ 0.7
CX3CL1P78423 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.4■□□□□ 0.7
CX3CL1P78423 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CX3CL1P78423 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CX3CL1P78423 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CX3CL1P78423 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CX3CL1P78423 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.39■□□□□ 0.7
CX3CL1P78423 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.39■□□□□ 0.69
CX3CL1P78423 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.39■□□□□ 0.69
CX3CL1P78423 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CX3CL1P78423 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
CX3CL1P78423 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CX3CL1P78423 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CX3CL1P78423 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CX3CL1P78423 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CX3CL1P78423 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CX3CL1P78423 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CX3CL1P78423 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms