Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
RPS28P62857 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RPS28P62857 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPS28P62857 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPS28P62857 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RPS28P62857 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RPS28P62857 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RPS28P62857 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC14.45□□□□□ -0.1
RPS28P62857 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 AL117328.2-201ENST00000624617 1940 ntBASIC14.45□□□□□ -0.1
RPS28P62857 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RPS28P62857 AL391422.3-201ENST00000603791 2761 ntBASIC14.45□□□□□ -0.1
RPS28P62857 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC14.45□□□□□ -0.1
RPS28P62857 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPS28P62857 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC14.44□□□□□ -0.1
RPS28P62857 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPS28P62857 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
RPS28P62857 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPS28P62857 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
RPS28P62857 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPS28P62857 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPS28P62857 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPS28P62857 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPS28P62857 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
RPS28P62857 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
RPS28P62857 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPS28P62857 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC14.42□□□□□ -0.1
RPS28P62857 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPS28P62857 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC14.42□□□□□ -0.1
RPS28P62857 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC14.42□□□□□ -0.1
RPS28P62857 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC14.42□□□□□ -0.1
RPS28P62857 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPS28P62857 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
RPS28P62857 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPS28P62857 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPS28P62857 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPS28P62857 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPS28P62857 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPS28P62857 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RPS28P62857 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPS28P62857 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPS28P62857 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPS28P62857 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC14.41□□□□□ -0.1
RPS28P62857 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC14.4□□□□□ -0.1
RPS28P62857 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPS28P62857 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RPS28P62857 PREB-202ENST00000406567 1910 ntTSL 5 BASIC14.39□□□□□ -0.11
RPS28P62857 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPS28P62857 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
RPS28P62857 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RPS28P62857 AC120057.4-201ENST00000624722 1615 ntBASIC14.39□□□□□ -0.11
RPS28P62857 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPS28P62857 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RPS28P62857 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RPS28P62857 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RPS28P62857 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC14.39□□□□□ -0.11
RPS28P62857 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPS28P62857 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RPS28P62857 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC14.39□□□□□ -0.11
RPS28P62857 PKD1P6-201ENST00000343738 4769 ntBASIC14.38□□□□□ -0.11
RPS28P62857 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC14.38□□□□□ -0.11
RPS28P62857 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
RPS28P62857 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.38□□□□□ -0.11
RPS28P62857 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RPS28P62857 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RPS28P62857 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RPS28P62857 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RPS28P62857 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RPS28P62857 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC14.37□□□□□ -0.11
RPS28P62857 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RPS28P62857 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RPS28P62857 AC137767.1-201ENST00000602918 1920 ntBASIC14.37□□□□□ -0.11
RPS28P62857 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RPS28P62857 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RPS28P62857 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RPS28P62857 AL158211.5-201ENST00000623583 2518 ntBASIC14.36□□□□□ -0.11
RPS28P62857 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPS28P62857 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RPS28P62857 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RPS28P62857 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms