Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
RNF103-CHMP3A0A140T963 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
RNF103-CHMP3A0A140T963 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RNF103-CHMP3A0A140T963 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 DUX4L11-201ENST00000611504 1267 ntBASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 DUX4L12-201ENST00000614593 1267 ntBASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 DUX4L14-201ENST00000621227 1267 ntBASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 AC142472.1-201ENST00000612013 1741 ntBASIC23.22■■□□□ 1.31
RNF103-CHMP3A0A140T963 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RNF103-CHMP3A0A140T963 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RNF103-CHMP3A0A140T963 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RNF103-CHMP3A0A140T963 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RNF103-CHMP3A0A140T963 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RNF103-CHMP3A0A140T963 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF103-CHMP3A0A140T963 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.18■■□□□ 1.3
RNF103-CHMP3A0A140T963 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RNF103-CHMP3A0A140T963 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF103-CHMP3A0A140T963 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.16■■□□□ 1.3
RNF103-CHMP3A0A140T963 ZNRF2P2-203ENST00000454624 420 ntBASIC23.16■■□□□ 1.3
RNF103-CHMP3A0A140T963 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
RNF103-CHMP3A0A140T963 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RNF103-CHMP3A0A140T963 AC008813.1-201ENST00000536597 885 ntBASIC23.15■■□□□ 1.3
RNF103-CHMP3A0A140T963 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.15■■□□□ 1.3
RNF103-CHMP3A0A140T963 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF103-CHMP3A0A140T963 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RNF103-CHMP3A0A140T963 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RNF103-CHMP3A0A140T963 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.14■■□□□ 1.3
RNF103-CHMP3A0A140T963 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
RNF103-CHMP3A0A140T963 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
RNF103-CHMP3A0A140T963 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
RNF103-CHMP3A0A140T963 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF103-CHMP3A0A140T963 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.14■■□□□ 1.29
RNF103-CHMP3A0A140T963 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF103-CHMP3A0A140T963 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.14■■□□□ 1.29
RNF103-CHMP3A0A140T963 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF103-CHMP3A0A140T963 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF103-CHMP3A0A140T963 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF103-CHMP3A0A140T963 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.13■■□□□ 1.29
RNF103-CHMP3A0A140T963 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
RNF103-CHMP3A0A140T963 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF103-CHMP3A0A140T963 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RNF103-CHMP3A0A140T963 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF103-CHMP3A0A140T963 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.11■■□□□ 1.29
RNF103-CHMP3A0A140T963 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF103-CHMP3A0A140T963 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RNF103-CHMP3A0A140T963 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RNF103-CHMP3A0A140T963 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RNF103-CHMP3A0A140T963 MIR219A2-201ENST00000608502 1504 ntBASIC23.1■■□□□ 1.29
RNF103-CHMP3A0A140T963 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.1■■□□□ 1.29
RNF103-CHMP3A0A140T963 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.1■■□□□ 1.29
RNF103-CHMP3A0A140T963 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.1■■□□□ 1.29
RNF103-CHMP3A0A140T963 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 AC148477.6-201ENST00000623746 465 ntBASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RNF103-CHMP3A0A140T963 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RNF103-CHMP3A0A140T963 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.08■■□□□ 1.29
RNF103-CHMP3A0A140T963 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RNF103-CHMP3A0A140T963 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms