Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 AC104076.2-201ENST00000448912 469 ntBASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 AC092647.4-201ENST00000457211 535 ntBASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 RN7SL606P-201ENST00000472779 293 ntBASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 AL353801.3-201ENST00000609898 542 ntBASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHA3Q9Y5H8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 AC211429.1-201ENST00000415277 523 ntBASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 AC063952.2-201ENST00000498792 1227 ntBASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 GUSBP12-201ENST00000513727 720 ntBASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 AC109462.3-201ENST00000573934 613 ntBASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 AC125634.1-201ENST00000438758 1403 ntBASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHA3Q9Y5H8 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 IGHV3-52-201ENST00000519770 353 ntBASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHA3Q9Y5H8 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHA3Q9Y5H8 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms