Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 AC246785.2-201ENST00000432512 513 ntBASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 AC122714.2-201ENST00000502787 707 ntBASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 AC005336.2-201ENST00000593183 939 ntBASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS29Q9UBQ0 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 CHCHD2P8-201ENST00000429873 447 ntBASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 AC103564.2-201ENST00000432853 1299 ntBASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 FAM86EP-206ENST00000510506 987 ntBASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 AC109462.3-201ENST00000573934 613 ntBASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 AC019129.2-201ENST00000609837 1235 ntBASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VPS29Q9UBQ0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 FAM210CP-201ENST00000445714 574 ntBASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 VENTXP7-201ENST00000475503 772 ntBASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VPS29Q9UBQ0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 AC016734.2-201ENST00000624325 1377 ntBASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS29Q9UBQ0 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms