Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.5■□□□□ 0.71
VTA1Q9NP79 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 PAWRP1-201ENST00000451083 565 ntBASIC19.49■□□□□ 0.71
VTA1Q9NP79 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 AC091812.2-201ENST00000619081 385 ntBASIC19.49■□□□□ 0.71
VTA1Q9NP79 LINC01451-201ENST00000623792 534 ntBASIC19.49■□□□□ 0.71
VTA1Q9NP79 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.49■□□□□ 0.71
VTA1Q9NP79 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VTA1Q9NP79 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VTA1Q9NP79 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
VTA1Q9NP79 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VTA1Q9NP79 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 AC068137.2-201ENST00000605408 478 ntBASIC19.48■□□□□ 0.71
VTA1Q9NP79 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.48■□□□□ 0.71
VTA1Q9NP79 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VTA1Q9NP79 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VTA1Q9NP79 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VTA1Q9NP79 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 AP000344.2-201ENST00000512987 629 ntBASIC19.47■□□□□ 0.71
VTA1Q9NP79 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 AP002472.1-201ENST00000577490 586 ntBASIC19.47■□□□□ 0.71
VTA1Q9NP79 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VTA1Q9NP79 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
VTA1Q9NP79 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VTA1Q9NP79 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 RFPL4AP1-201ENST00000530883 850 ntBASIC19.46■□□□□ 0.71
VTA1Q9NP79 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VTA1Q9NP79 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms