Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCSER1Q9C0I3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCSER1Q9C0I3 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.58■□□□□ 0.73
CCSER1Q9C0I3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCSER1Q9C0I3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCSER1Q9C0I3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCSER1Q9C0I3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCSER1Q9C0I3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 AC080080.1-201ENST00000625121 2420 ntBASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCSER1Q9C0I3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 AC093525.9-201ENST00000624961 1746 ntBASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 KLF4P1-201ENST00000412782 1185 ntBASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 KRT16P4-201ENST00000453883 522 ntBASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.57■□□□□ 0.72
CCSER1Q9C0I3 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 AL135999.2-201ENST00000622438 1686 ntBASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 ABCD1P5-201ENST00000445663 754 ntBASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 NUS1P1-201ENST00000446295 882 ntBASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CCSER1Q9C0I3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms