Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 AC055876.2-201ENST00000531834 546 ntBASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 MIR4515-201ENST00000584082 81 ntBASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.51■□□□□ 0.39
COL25A1Q9BXS0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 FP475955.4-201ENST00000623131 1990 ntBASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 AC114501.2-201ENST00000439631 535 ntBASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 AC114501.1-201ENST00000445949 172 ntBASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 RARRES2P9-201ENST00000565168 469 ntBASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL25A1Q9BXS0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 WASH6P-202ENST00000359512 1437 ntBASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 STK25P1-201ENST00000585406 838 ntBASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL25A1Q9BXS0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.48■□□□□ 0.39
COL25A1Q9BXS0 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms