Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX2Q99626 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX2Q99626 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX2Q99626 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.1■□□□□ 0.49
CDX2Q99626 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 ELK2AP-201ENST00000392510 1007 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.1■□□□□ 0.49
CDX2Q99626 GNAQP1-201ENST00000444815 1067 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 KRT223P-202ENST00000449164 1292 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 HLA-V-204ENST00000476601 1289 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CDX2Q99626 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX2Q99626 AC107918.2-201ENST00000530817 355 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX2Q99626 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 AC133552.6-201ENST00000613406 534 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.1■□□□□ 0.49
CDX2Q99626 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CDX2Q99626 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.1■□□□□ 0.49
CDX2Q99626 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX2Q99626 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CDX2Q99626 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CDX2Q99626 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.09■□□□□ 0.49
CDX2Q99626 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.09■□□□□ 0.49
CDX2Q99626 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 AC087499.6-201ENST00000411576 835 ntBASIC18.09■□□□□ 0.49
CDX2Q99626 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.09■□□□□ 0.49
CDX2Q99626 DFFBP1-201ENST00000433250 979 ntBASIC18.09■□□□□ 0.49
CDX2Q99626 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.09■□□□□ 0.49
CDX2Q99626 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.09■□□□□ 0.49
CDX2Q99626 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.09■□□□□ 0.49
CDX2Q99626 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.09■□□□□ 0.49
CDX2Q99626 AC003101.2-201ENST00000612557 442 ntBASIC18.09■□□□□ 0.49
CDX2Q99626 AC018529.1-201ENST00000613063 361 ntBASIC18.09■□□□□ 0.49
CDX2Q99626 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.09■□□□□ 0.49
CDX2Q99626 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.09■□□□□ 0.49
CDX2Q99626 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CDX2Q99626 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CDX2Q99626 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX2Q99626 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX2Q99626 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDX2Q99626 WASH6P-202ENST00000359512 1437 ntBASIC18.08■□□□□ 0.49
CDX2Q99626 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDX2Q99626 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.08■□□□□ 0.49
CDX2Q99626 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDX2Q99626 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDX2Q99626 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.49
CDX2Q99626 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CDX2Q99626 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDX2Q99626 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDX2Q99626 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDX2Q99626 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CDX2Q99626 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CDX2Q99626 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CDX2Q99626 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.08■□□□□ 0.48
CDX2Q99626 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CDX2Q99626 ACTBP11-201ENST00000436287 1126 ntBASIC18.08■□□□□ 0.48
CDX2Q99626 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.08■□□□□ 0.48
CDX2Q99626 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CDX2Q99626 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CDX2Q99626 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CDX2Q99626 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.08■□□□□ 0.48
CDX2Q99626 AC008494.3-201ENST00000606615 944 ntBASIC18.08■□□□□ 0.48
CDX2Q99626 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CDX2Q99626 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CDX2Q99626 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDX2Q99626 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDX2Q99626 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.08■□□□□ 0.48
CDX2Q99626 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDX2Q99626 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.08■□□□□ 0.48
CDX2Q99626 CLDN5-201ENST00000403084 2357 ntBASIC18.08■□□□□ 0.48
CDX2Q99626 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDX2Q99626 LINC01006-201ENST00000333319 2292 ntBASIC18.07■□□□□ 0.48
CDX2Q99626 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CDX2Q99626 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.07■□□□□ 0.48
CDX2Q99626 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CDX2Q99626 AL391825.1-201ENST00000457671 1364 ntBASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms