Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 RBM17P3-201ENST00000417687 1192 ntBASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 AP001005.1-201ENST00000571755 1248 ntBASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 AL773604.1-201ENST00000617417 272 ntBASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLIP3Q96DZ5 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 AC141586.5-201ENST00000624546 2050 ntBASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 SCARNA2-201ENST00000458748 420 ntBASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 AC073648.2-201ENST00000510116 352 ntBASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 AL355877.3-201ENST00000622820 899 ntBASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 PRORSD1P-202ENST00000563365 2154 ntBASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 HLA-A-201ENST00000376802 1334 ntBASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLIP3Q96DZ5 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 AC093010.1-201ENST00000473625 1624 ntBASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 OR6D1P-203ENST00000641209 4860 ntBASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms