Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
BRF1Q92994 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.62■□□□□ 0.89
BRF1Q92994 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
BRF1Q92994 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.62■□□□□ 0.89
BRF1Q92994 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.62■□□□□ 0.89
BRF1Q92994 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 AC103564.2-201ENST00000432853 1299 ntBASIC20.62■□□□□ 0.89
BRF1Q92994 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.62■□□□□ 0.89
BRF1Q92994 IGHV3-52-201ENST00000519770 353 ntBASIC20.62■□□□□ 0.89
BRF1Q92994 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.62■□□□□ 0.89
BRF1Q92994 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.62■□□□□ 0.89
BRF1Q92994 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.62■□□□□ 0.89
BRF1Q92994 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.62■□□□□ 0.89
BRF1Q92994 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
BRF1Q92994 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 PCDHA12-202ENST00000613593 2588 ntBASIC20.62■□□□□ 0.89
BRF1Q92994 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
BRF1Q92994 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.62■□□□□ 0.89
BRF1Q92994 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRF1Q92994 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
BRF1Q92994 RCN1P2-201ENST00000398357 915 ntBASIC20.61■□□□□ 0.89
BRF1Q92994 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.61■□□□□ 0.89
BRF1Q92994 UPK3BP1-201ENST00000428678 509 ntBASIC20.61■□□□□ 0.89
BRF1Q92994 AC104819.1-201ENST00000504587 486 ntBASIC20.61■□□□□ 0.89
BRF1Q92994 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRF1Q92994 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.61■□□□□ 0.89
BRF1Q92994 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.61■□□□□ 0.89
BRF1Q92994 INTS4P1-201ENST00000438455 1935 ntBASIC20.61■□□□□ 0.89
BRF1Q92994 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
BRF1Q92994 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
BRF1Q92994 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
BRF1Q92994 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.6■□□□□ 0.89
BRF1Q92994 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
BRF1Q92994 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.6■□□□□ 0.89
BRF1Q92994 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
BRF1Q92994 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
BRF1Q92994 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
BRF1Q92994 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 AC012615.1-201ENST00000565797 1299 ntBASIC20.6■□□□□ 0.89
BRF1Q92994 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.6■□□□□ 0.89
BRF1Q92994 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.6■□□□□ 0.89
BRF1Q92994 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BRF1Q92994 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
BRF1Q92994 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 AL353593.2-201ENST00000602529 1483 ntBASIC20.59■□□□□ 0.89
BRF1Q92994 MYCLP1-201ENST00000372451 1075 ntBASIC20.59■□□□□ 0.89
BRF1Q92994 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
BRF1Q92994 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.59■□□□□ 0.89
BRF1Q92994 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
BRF1Q92994 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.59■□□□□ 0.89
BRF1Q92994 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.59■□□□□ 0.89
BRF1Q92994 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
BRF1Q92994 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms