Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HMGB4Q8WW32 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HMGB4Q8WW32 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HMGB4Q8WW32 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.52■□□□□ 0.4
HMGB4Q8WW32 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AP002414.1-201ENST00000391405 1147 ntBASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 PDPK2P-202ENST00000562415 1191 ntBASIC17.52■□□□□ 0.4
HMGB4Q8WW32 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AL353135.1-201ENST00000606729 504 ntBASIC17.52■□□□□ 0.4
HMGB4Q8WW32 GGTLC5P-201ENST00000617623 998 ntBASIC17.52■□□□□ 0.4
HMGB4Q8WW32 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB4Q8WW32 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB4Q8WW32 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB4Q8WW32 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB4Q8WW32 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.52■□□□□ 0.39
HMGB4Q8WW32 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB4Q8WW32 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.52■□□□□ 0.39
HMGB4Q8WW32 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 KRT19P2-202ENST00000557173 1012 ntBASIC17.51■□□□□ 0.39
HMGB4Q8WW32 AC096734.2-201ENST00000562054 433 ntBASIC17.51■□□□□ 0.39
HMGB4Q8WW32 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB4Q8WW32 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 CYMP-203ENST00000474680 1263 ntBASIC17.5■□□□□ 0.39
HMGB4Q8WW32 RFPL4AP1-201ENST00000530883 850 ntBASIC17.5■□□□□ 0.39
HMGB4Q8WW32 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB4Q8WW32 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms