Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 LINC00602-201ENST00000629776 2065 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 DNAJB3-202ENST00000449667 1266 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 MEG3-211ENST00000452514 461 ntTSL 3 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AF186996.4-201ENST00000467186 377 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 IRF8-202ENST00000562492 946 ntTSL 3 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 COX5A-204ENST00000567270 579 ntTSL 3 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC134684.3-201ENST00000641758 218 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SDHAP2-201ENST00000455183 2001 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ADM-207ENST00000530439 1839 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 RCN1P2-201ENST00000398357 915 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 LITAF-211ENST00000572255 516 ntTSL 4 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC140113.2-201ENST00000604370 208 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 LINC02084-201ENST00000606069 1096 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 KRT89P-201ENST00000620027 1478 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AC025062.2-201ENST00000605477 670 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 AP001269.4-201ENST00000609611 512 ntBASIC5.42□□□□□ -1.54
SYNE1Q8NF91 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SYNE1Q8NF91 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms