Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DNAJB3-202ENST00000449667 1266 ntBASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 REXO1L11P-201ENST00000620964 1927 ntBASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 AC007967.2-201ENST00000432613 625 ntBASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 AC009533.2-201ENST00000543664 586 ntBASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SH3RF1Q7Z6J0 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 AL138688.1-201ENST00000624851 1594 ntBASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SH3RF1Q7Z6J0 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AC023274.1-201ENST00000418278 595 ntBASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 ABCD1P5-201ENST00000445663 754 ntBASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 UNC93B6-202ENST00000528242 690 ntBASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AL138831.2-201ENST00000606564 490 ntBASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SH3RF1Q7Z6J0 AL356309.3-201ENST00000624132 1934 ntBASIC20.02■□□□□ 0.79
SH3RF1Q7Z6J0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SH3RF1Q7Z6J0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
SH3RF1Q7Z6J0 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms