Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 MYCLP1-201ENST00000372451 1075 ntBASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 IGLL3P-201ENST00000412472 434 ntBASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 RPS8P6-201ENST00000426177 609 ntBASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 PRSS29P-201ENST00000440800 595 ntBASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNFT1Q5M7Z0 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 MCCD1P2-201ENST00000423228 335 ntBASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 MTDHP5-201ENST00000598980 586 ntBASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 AL513190.1-201ENST00000621254 727 ntBASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 AC134684.3-201ENST00000641758 218 ntBASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.72■□□□□ 0.11
RNFT1Q5M7Z0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 AC004967.1-201ENST00000453589 447 ntBASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 OR7E47P-204ENST00000575924 449 ntBASIC15.71■□□□□ 0.11
RNFT1Q5M7Z0 AP001160.2-201ENST00000596071 487 ntBASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms