Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFX4Q33E94 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
RFX4Q33E94 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
RFX4Q33E94 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 FLJ38576-201ENST00000623820 2459 ntBASIC16.33■□□□□ 0.2
RFX4Q33E94 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.33■□□□□ 0.2
RFX4Q33E94 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 TMEM191A-211ENST00000637163 1067 ntBASIC16.33■□□□□ 0.2
RFX4Q33E94 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.33■□□□□ 0.2
RFX4Q33E94 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.33■□□□□ 0.2
RFX4Q33E94 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RFX4Q33E94 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
RFX4Q33E94 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.33■□□□□ 0.2
RFX4Q33E94 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.33■□□□□ 0.2
RFX4Q33E94 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
RFX4Q33E94 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.33■□□□□ 0.2
RFX4Q33E94 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.32■□□□□ 0.2
RFX4Q33E94 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.32■□□□□ 0.2
RFX4Q33E94 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.32■□□□□ 0.2
RFX4Q33E94 EGLN1P1-201ENST00000531623 762 ntBASIC16.32■□□□□ 0.2
RFX4Q33E94 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
RFX4Q33E94 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.32■□□□□ 0.2
RFX4Q33E94 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.32■□□□□ 0.2
RFX4Q33E94 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
RFX4Q33E94 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
RFX4Q33E94 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFX4Q33E94 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.32■□□□□ 0.2
RFX4Q33E94 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
RFX4Q33E94 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.31■□□□□ 0.2
RFX4Q33E94 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.31■□□□□ 0.2
RFX4Q33E94 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 AC116353.5-201ENST00000638148 1699 ntBASIC16.31■□□□□ 0.2
RFX4Q33E94 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RFX4Q33E94 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RFX4Q33E94 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.31■□□□□ 0.2
RFX4Q33E94 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
RFX4Q33E94 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.31■□□□□ 0.2
RFX4Q33E94 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.31■□□□□ 0.2
RFX4Q33E94 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
RFX4Q33E94 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFX4Q33E94 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms