Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
ABCA4P78363 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.04■□□□□ -0
ABCA4P78363 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.04■□□□□ -0
ABCA4P78363 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.04■□□□□ -0
ABCA4P78363 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.04■□□□□ -0
ABCA4P78363 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.04■□□□□ -0
ABCA4P78363 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.04■□□□□ -0
ABCA4P78363 AL513190.1-201ENST00000621254 727 ntBASIC15.04■□□□□ -0
ABCA4P78363 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC15.04■□□□□ -0
ABCA4P78363 AC092902.6-201ENST00000641783 218 ntBASIC15.04■□□□□ -0
ABCA4P78363 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ABCA4P78363 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.04■□□□□ -0
ABCA4P78363 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
ABCA4P78363 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
ABCA4P78363 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.03■□□□□ -0
ABCA4P78363 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
ABCA4P78363 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
ABCA4P78363 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 RHOQP3-201ENST00000437982 621 ntBASIC15.03■□□□□ -0
ABCA4P78363 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 IGHV3-65-201ENST00000523210 341 ntBASIC15.03■□□□□ -0
ABCA4P78363 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 AC004877.2-201ENST00000623941 599 ntBASIC15.03■□□□□ -0
ABCA4P78363 AC004408.2-201ENST00000623613 2777 ntBASIC15.03■□□□□ -0
ABCA4P78363 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
ABCA4P78363 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 AC098818.2-201ENST00000564925 2320 ntBASIC15.03■□□□□ -0
ABCA4P78363 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 REXO1L11P-201ENST00000620964 1927 ntBASIC15.03■□□□□ -0
ABCA4P78363 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.03■□□□□ -0
ABCA4P78363 DUTP2-201ENST00000519164 463 ntBASIC15.03■□□□□ -0
ABCA4P78363 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.03■□□□□ -0
ABCA4P78363 AC008667.4-201ENST00000607370 168 ntBASIC15.03■□□□□ -0
ABCA4P78363 AL035252.4-201ENST00000624174 288 ntBASIC15.03■□□□□ -0
ABCA4P78363 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
ABCA4P78363 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.02■□□□□ -0
ABCA4P78363 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
ABCA4P78363 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.02■□□□□ -0
ABCA4P78363 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
ABCA4P78363 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
ABCA4P78363 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
ABCA4P78363 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
ABCA4P78363 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.02□□□□□ -0.01
ABCA4P78363 AC190387.1-201ENST00000551683 408 ntBASIC15.02□□□□□ -0.01
ABCA4P78363 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.02□□□□□ -0.01
ABCA4P78363 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.02□□□□□ -0.01
ABCA4P78363 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
ABCA4P78363 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.02□□□□□ -0.01
ABCA4P78363 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC15.02□□□□□ -0.01
ABCA4P78363 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
ABCA4P78363 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.02□□□□□ -0.01
ABCA4P78363 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.02□□□□□ -0.01
ABCA4P78363 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
ABCA4P78363 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
ABCA4P78363 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.02□□□□□ -0.01
ABCA4P78363 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
ABCA4P78363 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
ABCA4P78363 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
ABCA4P78363 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.01□□□□□ -0.01
ABCA4P78363 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.01□□□□□ -0.01
ABCA4P78363 AC138761.1-201ENST00000584393 385 ntBASIC15.01□□□□□ -0.01
ABCA4P78363 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
ABCA4P78363 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
ABCA4P78363 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.01□□□□□ -0.01
ABCA4P78363 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
ABCA4P78363 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms