Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC4P56524 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.31■□□□□ 0.52
HDAC4P56524 POM121L3P-201ENST00000419331 1163 ntBASIC18.31■□□□□ 0.52
HDAC4P56524 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 AC103564.2-201ENST00000432853 1299 ntBASIC18.31■□□□□ 0.52
HDAC4P56524 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC4P56524 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.31■□□□□ 0.52
HDAC4P56524 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.31■□□□□ 0.52
HDAC4P56524 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HDAC4P56524 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HDAC4P56524 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.31■□□□□ 0.52
HDAC4P56524 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC4P56524 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.31■□□□□ 0.52
HDAC4P56524 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HDAC4P56524 CROCCP2-202ENST00000412962 2773 ntBASIC18.3■□□□□ 0.52
HDAC4P56524 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HDAC4P56524 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.3■□□□□ 0.52
HDAC4P56524 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.3■□□□□ 0.52
HDAC4P56524 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HDAC4P56524 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.3■□□□□ 0.52
HDAC4P56524 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.3■□□□□ 0.52
HDAC4P56524 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 AL139327.4-201ENST00000612362 153 ntBASIC18.3■□□□□ 0.52
HDAC4P56524 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
HDAC4P56524 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.3■□□□□ 0.52
HDAC4P56524 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HDAC4P56524 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HDAC4P56524 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HDAC4P56524 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 AL353593.2-201ENST00000602529 1483 ntBASIC18.29■□□□□ 0.52
HDAC4P56524 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HDAC4P56524 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HDAC4P56524 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.29■□□□□ 0.52
HDAC4P56524 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.29■□□□□ 0.52
HDAC4P56524 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.29■□□□□ 0.52
HDAC4P56524 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.29■□□□□ 0.52
HDAC4P56524 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 AD001527.2-201ENST00000622994 785 ntBASIC18.29■□□□□ 0.52
HDAC4P56524 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.29■□□□□ 0.52
HDAC4P56524 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.29■□□□□ 0.52
HDAC4P56524 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.29■□□□□ 0.52
HDAC4P56524 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HDAC4P56524 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms