Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.48■□□□□ 0.55
LIG3P49916 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LIG3P49916 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
LIG3P49916 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.48■□□□□ 0.55
LIG3P49916 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.47■□□□□ 0.55
LIG3P49916 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.47■□□□□ 0.55
LIG3P49916 AL391807.1-203ENST00000604392 2365 ntBASIC18.47■□□□□ 0.55
LIG3P49916 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.47■□□□□ 0.55
LIG3P49916 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LIG3P49916 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.47■□□□□ 0.55
LIG3P49916 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.47■□□□□ 0.55
LIG3P49916 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.47■□□□□ 0.55
LIG3P49916 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.47■□□□□ 0.55
LIG3P49916 AL136038.4-201ENST00000603606 1261 ntBASIC18.47■□□□□ 0.55
LIG3P49916 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.47■□□□□ 0.55
LIG3P49916 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 AL121761.2-201ENST00000598007 1648 ntBASIC18.47■□□□□ 0.55
LIG3P49916 AL023806.1-201ENST00000603994 1649 ntBASIC18.47■□□□□ 0.55
LIG3P49916 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.47■□□□□ 0.55
LIG3P49916 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.47■□□□□ 0.55
LIG3P49916 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LIG3P49916 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.47■□□□□ 0.55
LIG3P49916 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
LIG3P49916 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.47■□□□□ 0.55
LIG3P49916 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.47■□□□□ 0.55
LIG3P49916 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIG3P49916 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.46■□□□□ 0.55
LIG3P49916 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LIG3P49916 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.46■□□□□ 0.55
LIG3P49916 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.46■□□□□ 0.55
LIG3P49916 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.46■□□□□ 0.55
LIG3P49916 AP000593.1-201ENST00000393668 712 ntBASIC18.46■□□□□ 0.55
LIG3P49916 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 HLA-F-220ENST00000434407 884 ntBASIC18.46■□□□□ 0.55
LIG3P49916 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.46■□□□□ 0.55
LIG3P49916 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 AC116407.4-201ENST00000623319 1061 ntBASIC18.46■□□□□ 0.55
LIG3P49916 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 LINC00602-201ENST00000629776 2065 ntBASIC18.46■□□□□ 0.55
LIG3P49916 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LIG3P49916 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.46■□□□□ 0.55
LIG3P49916 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIG3P49916 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
LIG3P49916 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
LIG3P49916 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
LIG3P49916 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIG3P49916 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
LIG3P49916 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.45■□□□□ 0.54
LIG3P49916 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.45■□□□□ 0.54
LIG3P49916 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.45■□□□□ 0.54
LIG3P49916 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIG3P49916 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
LIG3P49916 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.45■□□□□ 0.54
LIG3P49916 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIG3P49916 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
LIG3P49916 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.45■□□□□ 0.54
LIG3P49916 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIG3P49916 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIG3P49916 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
LIG3P49916 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIG3P49916 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms