Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.65■□□□□ 0.42
CCNFP41002 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.65■□□□□ 0.42
CCNFP41002 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.65■□□□□ 0.42
CCNFP41002 AC010331.1-201ENST00000611423 582 ntBASIC17.65■□□□□ 0.42
CCNFP41002 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.65■□□□□ 0.42
CCNFP41002 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.65■□□□□ 0.42
CCNFP41002 AC060834.1-201ENST00000443027 2032 ntBASIC17.65■□□□□ 0.42
CCNFP41002 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCNFP41002 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.65■□□□□ 0.42
CCNFP41002 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
CCNFP41002 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.65■□□□□ 0.42
CCNFP41002 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.64■□□□□ 0.42
CCNFP41002 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCNFP41002 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CCNFP41002 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCNFP41002 AL162727.3-201ENST00000635661 2787 ntBASIC17.64■□□□□ 0.41
CCNFP41002 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
CCNFP41002 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.64■□□□□ 0.41
CCNFP41002 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.64■□□□□ 0.41
CCNFP41002 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.64■□□□□ 0.41
CCNFP41002 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCNFP41002 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.64■□□□□ 0.41
CCNFP41002 LYSMD4-203ENST00000378904 2122 ntBASIC17.64■□□□□ 0.41
CCNFP41002 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.64■□□□□ 0.41
CCNFP41002 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.64■□□□□ 0.41
CCNFP41002 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.64■□□□□ 0.41
CCNFP41002 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.64■□□□□ 0.41
CCNFP41002 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.64■□□□□ 0.41
CCNFP41002 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.64■□□□□ 0.41
CCNFP41002 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 AC116353.5-201ENST00000638148 1699 ntBASIC17.64■□□□□ 0.41
CCNFP41002 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCNFP41002 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.64■□□□□ 0.41
CCNFP41002 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.63■□□□□ 0.41
CCNFP41002 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.63■□□□□ 0.41
CCNFP41002 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CCNFP41002 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.63■□□□□ 0.41
CCNFP41002 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.63■□□□□ 0.41
CCNFP41002 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.63■□□□□ 0.41
CCNFP41002 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.63■□□□□ 0.41
CCNFP41002 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.63■□□□□ 0.41
CCNFP41002 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.63■□□□□ 0.41
CCNFP41002 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCNFP41002 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CCNFP41002 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCNFP41002 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.62■□□□□ 0.41
CCNFP41002 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCNFP41002 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCNFP41002 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CCNFP41002 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCNFP41002 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCNFP41002 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms