Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.47■□□□□ 0.87
SCN4AP35499 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SCN4AP35499 AL135999.2-201ENST00000622438 1686 ntBASIC20.47■□□□□ 0.87
SCN4AP35499 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.47■□□□□ 0.87
SCN4AP35499 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.47■□□□□ 0.87
SCN4AP35499 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SCN4AP35499 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.47■□□□□ 0.87
SCN4AP35499 AL138828.2-201ENST00000615812 383 ntBASIC20.47■□□□□ 0.87
SCN4AP35499 SPDYE12P-201ENST00000618416 771 ntBASIC20.47■□□□□ 0.87
SCN4AP35499 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SCN4AP35499 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.47■□□□□ 0.87
SCN4AP35499 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.47■□□□□ 0.87
SCN4AP35499 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SCN4AP35499 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SCN4AP35499 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SCN4AP35499 AC126763.1-201ENST00000552015 2118 ntBASIC20.46■□□□□ 0.87
SCN4AP35499 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.46■□□□□ 0.87
SCN4AP35499 MIR3909-201ENST00000579518 119 ntBASIC20.46■□□□□ 0.87
SCN4AP35499 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.46■□□□□ 0.87
SCN4AP35499 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.46■□□□□ 0.87
SCN4AP35499 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SCN4AP35499 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.46■□□□□ 0.87
SCN4AP35499 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.46■□□□□ 0.87
SCN4AP35499 TP53TG3HP-202ENST00000569755 579 ntBASIC20.46■□□□□ 0.87
SCN4AP35499 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.45■□□□□ 0.86
SCN4AP35499 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SCN4AP35499 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.45■□□□□ 0.86
SCN4AP35499 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 AC009477.1-201ENST00000452936 217 ntBASIC20.45■□□□□ 0.86
SCN4AP35499 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.45■□□□□ 0.86
SCN4AP35499 AC109635.5-201ENST00000533593 962 ntBASIC20.45■□□□□ 0.86
SCN4AP35499 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.45■□□□□ 0.86
SCN4AP35499 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.45■□□□□ 0.86
SCN4AP35499 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SCN4AP35499 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.45■□□□□ 0.86
SCN4AP35499 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SCN4AP35499 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.44■□□□□ 0.86
SCN4AP35499 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.44■□□□□ 0.86
SCN4AP35499 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.44■□□□□ 0.86
SCN4AP35499 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.44■□□□□ 0.86
SCN4AP35499 API5-211ENST00000534695 560 ntTSL 5 BASIC20.44■□□□□ 0.86
SCN4AP35499 AC005412.3-201ENST00000580309 715 ntBASIC20.44■□□□□ 0.86
SCN4AP35499 AC027307.2-201ENST00000591252 911 ntBASIC20.44■□□□□ 0.86
SCN4AP35499 MIR6799-201ENST00000620297 69 ntBASIC20.44■□□□□ 0.86
SCN4AP35499 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
SCN4AP35499 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SCN4AP35499 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SCN4AP35499 AL096828.2-201ENST00000567259 1965 ntBASIC20.44■□□□□ 0.86
SCN4AP35499 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SCN4AP35499 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.44■□□□□ 0.86
SCN4AP35499 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SCN4AP35499 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.43■□□□□ 0.86
SCN4AP35499 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.43■□□□□ 0.86
SCN4AP35499 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SCN4AP35499 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.43■□□□□ 0.86
SCN4AP35499 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.43■□□□□ 0.86
SCN4AP35499 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 AC004840.1-201ENST00000636359 365 ntBASIC20.43■□□□□ 0.86
SCN4AP35499 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.43■□□□□ 0.86
SCN4AP35499 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SCN4AP35499 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SCN4AP35499 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SCN4AP35499 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms