Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 TSPY12P-201ENST00000421279 868 ntBASIC13.39□□□□□ -0.27
HLA-DMBP28068 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC13.39□□□□□ -0.27
HLA-DMBP28068 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 DDX43P3-201ENST00000441064 443 ntBASIC13.39□□□□□ -0.27
HLA-DMBP28068 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HLA-DMBP28068 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.39□□□□□ -0.27
HLA-DMBP28068 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 KRT89P-201ENST00000620027 1478 ntBASIC13.38□□□□□ -0.27
HLA-DMBP28068 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AC112698.1-201ENST00000510299 916 ntBASIC13.38□□□□□ -0.27
HLA-DMBP28068 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HLA-DMBP28068 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HLA-DMBP28068 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 HLA-F-220ENST00000434407 884 ntBASIC13.37□□□□□ -0.27
HLA-DMBP28068 KRT18P38-201ENST00000449496 1282 ntBASIC13.37□□□□□ -0.27
HLA-DMBP28068 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC13.37□□□□□ -0.27
HLA-DMBP28068 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HLA-DMBP28068 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms