Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VIMP08670 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VIMP08670 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VIMP08670 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VIMP08670 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 AP002982.1-201ENST00000492365 877 ntBASIC17.66■□□□□ 0.42
VIMP08670 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.66■□□□□ 0.42
VIMP08670 AC098934.4-201ENST00000564127 592 ntBASIC17.66■□□□□ 0.42
VIMP08670 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.66■□□□□ 0.42
VIMP08670 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.66■□□□□ 0.42
VIMP08670 AL109923.1-201ENST00000618799 583 ntBASIC17.66■□□□□ 0.42
VIMP08670 AL023875.1-201ENST00000640777 796 ntBASIC17.66■□□□□ 0.42
VIMP08670 AC116353.5-201ENST00000638148 1699 ntBASIC17.66■□□□□ 0.42
VIMP08670 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.66■□□□□ 0.42
VIMP08670 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VIMP08670 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.66■□□□□ 0.42
VIMP08670 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.66■□□□□ 0.42
VIMP08670 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.66■□□□□ 0.42
VIMP08670 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VIMP08670 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.65■□□□□ 0.42
VIMP08670 AC130371.2-201ENST00000619443 611 ntBASIC17.65■□□□□ 0.42
VIMP08670 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 FLJ16779-201ENST00000612722 7638 ntBASIC17.65■□□□□ 0.42
VIMP08670 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.65■□□□□ 0.42
VIMP08670 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VIMP08670 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.65■□□□□ 0.42
VIMP08670 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VIMP08670 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VIMP08670 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.64■□□□□ 0.42
VIMP08670 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.64■□□□□ 0.42
VIMP08670 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VIMP08670 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VIMP08670 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
VIMP08670 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
VIMP08670 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 KRT18P23-201ENST00000435622 1283 ntBASIC17.64■□□□□ 0.41
VIMP08670 AC069152.1-201ENST00000438030 544 ntBASIC17.64■□□□□ 0.41
VIMP08670 KSR1P1-201ENST00000446298 240 ntBASIC17.64■□□□□ 0.41
VIMP08670 AC009065.1-201ENST00000564055 1225 ntBASIC17.64■□□□□ 0.41
VIMP08670 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.64■□□□□ 0.41
VIMP08670 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
VIMP08670 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
VIMP08670 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VIMP08670 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms