Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.22■□□□□ 0.35
VPS4BO75351 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 AC011498.5-201ENST00000592027 486 ntBASIC17.22■□□□□ 0.35
VPS4BO75351 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.22■□□□□ 0.35
VPS4BO75351 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VPS4BO75351 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS4BO75351 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS4BO75351 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS4BO75351 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS4BO75351 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VPS4BO75351 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VPS4BO75351 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VPS4BO75351 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 NUS1P1-201ENST00000446295 882 ntBASIC17.21■□□□□ 0.35
VPS4BO75351 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.21■□□□□ 0.35
VPS4BO75351 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS4BO75351 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VPS4BO75351 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS4BO75351 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.21■□□□□ 0.34
VPS4BO75351 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS4BO75351 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VPS4BO75351 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS4BO75351 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VPS4BO75351 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS4BO75351 REXO1L11P-201ENST00000620964 1927 ntBASIC17.2■□□□□ 0.34
VPS4BO75351 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS4BO75351 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS4BO75351 UNC93B7-201ENST00000509439 705 ntBASIC17.2■□□□□ 0.34
VPS4BO75351 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VPS4BO75351 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS4BO75351 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
VPS4BO75351 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS4BO75351 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS4BO75351 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS4BO75351 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS4BO75351 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 KRT89P-201ENST00000620027 1478 ntBASIC17.19■□□□□ 0.34
VPS4BO75351 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS4BO75351 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS4BO75351 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VPS4BO75351 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS4BO75351 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VPS4BO75351 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.19■□□□□ 0.34
VPS4BO75351 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS4BO75351 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS4BO75351 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS4BO75351 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms