Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.95□□□□□ -0.02
SDCBPO00560 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
SDCBPO00560 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.95□□□□□ -0.02
SDCBPO00560 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC14.95□□□□□ -0.02
SDCBPO00560 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SDCBPO00560 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.95□□□□□ -0.02
SDCBPO00560 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SDCBPO00560 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SDCBPO00560 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SDCBPO00560 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 AC113347.1-201ENST00000413321 391 ntBASIC14.94□□□□□ -0.02
SDCBPO00560 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.94□□□□□ -0.02
SDCBPO00560 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC14.94□□□□□ -0.02
SDCBPO00560 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC14.94□□□□□ -0.02
SDCBPO00560 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.94□□□□□ -0.02
SDCBPO00560 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.94□□□□□ -0.02
SDCBPO00560 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SDCBPO00560 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SDCBPO00560 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.94□□□□□ -0.02
SDCBPO00560 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SDCBPO00560 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.93□□□□□ -0.02
SDCBPO00560 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 PCDHA14-201ENST00000506751 2298 ntBASIC14.93□□□□□ -0.02
SDCBPO00560 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.93□□□□□ -0.02
SDCBPO00560 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
SDCBPO00560 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
SDCBPO00560 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.93□□□□□ -0.02
SDCBPO00560 LGALS8-AS1-201ENST00000487567 1457 ntBASIC14.93□□□□□ -0.02
SDCBPO00560 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.93□□□□□ -0.02
SDCBPO00560 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SDCBPO00560 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms