Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 AC139713.2-201ENST00000641328 2723 ntBASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 AL845331.1-201ENST00000424978 1190 ntBASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 AC005336.2-201ENST00000593183 939 ntBASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 Z69720.1-201ENST00000601483 472 ntBASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 KRT18P1-202ENST00000452408 1331 ntBASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 CROCCP2-202ENST00000412962 2773 ntBASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 AL645608.8-201ENST00000606034 2086 ntBASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 RN7SL832P-201ENST00000607781 1756 ntBASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 PP12613-201ENST00000424958 2230 ntBASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 MIR1224-201ENST00000408193 85 ntBASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 DRAXINP1-201ENST00000437611 948 ntBASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 AP000550.4-202ENST00000639755 178 ntBASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS9D1Q9Y2B5 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.46■□□□□ 0.38
VPS9D1Q9Y2B5 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.46■□□□□ 0.38
VPS9D1Q9Y2B5 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS9D1Q9Y2B5 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS9D1Q9Y2B5 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms