Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 RN7SL850P-201ENST00000579959 291 ntBASIC15.7■□□□□ 0.1
VSX1Q9NZR4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VSX1Q9NZR4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.69■□□□□ 0.1
VSX1Q9NZR4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 GUSBP12-201ENST00000513727 720 ntBASIC15.69■□□□□ 0.1
VSX1Q9NZR4 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 AL139327.4-201ENST00000612362 153 ntBASIC15.69■□□□□ 0.1
VSX1Q9NZR4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VSX1Q9NZR4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 AC010460.3-201ENST00000511359 1579 ntBASIC15.68■□□□□ 0.1
VSX1Q9NZR4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 RN7SL606P-201ENST00000472779 293 ntBASIC15.68■□□□□ 0.1
VSX1Q9NZR4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 AL353801.3-201ENST00000609898 542 ntBASIC15.68■□□□□ 0.1
VSX1Q9NZR4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VSX1Q9NZR4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 AC080080.1-201ENST00000625121 2420 ntBASIC15.67■□□□□ 0.1
VSX1Q9NZR4 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VSX1Q9NZR4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms