Protein–RNA interactions for Protein: Q9NU39

FOXD4L1, Forkhead box protein D4-like 1, humanhuman

Predictions only

Length 408 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD4L1Q9NU39 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 SEPT14P1-201ENST00000458703 648 ntBASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 DUTP2-201ENST00000519164 463 ntBASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 AL158211.1-201ENST00000566763 763 ntBASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
FOXD4L1Q9NU39 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 SLC25A1P2-201ENST00000430693 912 ntBASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 REXO1L11P-201ENST00000620964 1927 ntBASIC21.16■□□□□ 0.98
FOXD4L1Q9NU39 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 AC012618.2-201ENST00000428058 849 ntBASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 GCSHP5-201ENST00000443090 522 ntBASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 UBE2SP1-201ENST00000450587 669 ntBASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FOXD4L1Q9NU39 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 LINC00167-201ENST00000530583 1419 ntBASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
FOXD4L1Q9NU39 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 MIR1238-201ENST00000408483 83 ntBASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 AC009065.1-201ENST00000564055 1225 ntBASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.14■□□□□ 0.97
FOXD4L1Q9NU39 AC109809.1-201ENST00000619665 545 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms