Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 HYMAI.1-201ENST00000620949 238 ntBASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM56Q9BRZ2 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 AL031432.5-201ENST00000641059 760 ntBASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM56Q9BRZ2 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 HBZP1-201ENST00000354915 429 ntBASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 IGHGP-201ENST00000390555 1178 ntBASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 SPDYE13P-201ENST00000445314 798 ntBASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 AL049597.2-201ENST00000565575 961 ntBASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 RNF126P1-202ENST00000569893 925 ntBASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 AD000864.1-201ENST00000624076 2295 ntBASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 FER1L4-210ENST00000615531 5998 ntBASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM56Q9BRZ2 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 TSPY12P-201ENST00000421279 868 ntBASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 TSPY5P-201ENST00000426936 936 ntBASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 AC112907.2-201ENST00000448639 330 ntBASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 AC112698.1-201ENST00000510299 916 ntBASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM56Q9BRZ2 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms