Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 AC012317.2-201ENST00000623305 2251 ntBASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 AKR1C7P-201ENST00000305623 895 ntBASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTCHD1Q96NR3 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 AF238378.1-201ENST00000526806 358 ntBASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 AP001269.4-201ENST00000609611 512 ntBASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD1Q96NR3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 AP005117.1-201ENST00000584346 1413 ntBASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD1Q96NR3 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms