Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LINC00477Q96M19 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 LGALS8-AS1-201ENST00000487567 1457 ntBASIC13.17□□□□□ -0.3
LINC00477Q96M19 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 IGHGP-201ENST00000390555 1178 ntBASIC13.17□□□□□ -0.3
LINC00477Q96M19 AC087499.1-201ENST00000418141 1075 ntBASIC13.17□□□□□ -0.3
LINC00477Q96M19 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 MTCL1P1-201ENST00000446207 792 ntBASIC13.17□□□□□ -0.3
LINC00477Q96M19 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 AL441883.1-201ENST00000566170 1045 ntBASIC13.17□□□□□ -0.3
LINC00477Q96M19 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.17□□□□□ -0.3
LINC00477Q96M19 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 PCDHA12-202ENST00000613593 2588 ntBASIC13.17□□□□□ -0.3
LINC00477Q96M19 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LINC00477Q96M19 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 LINC01311-201ENST00000565162 1445 ntBASIC13.16□□□□□ -0.3
LINC00477Q96M19 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 AL596275.1-201ENST00000423464 877 ntBASIC13.16□□□□□ -0.3
LINC00477Q96M19 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.16□□□□□ -0.3
LINC00477Q96M19 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 LYSMD4-203ENST00000378904 2122 ntBASIC13.16□□□□□ -0.3
LINC00477Q96M19 AL353692.3-201ENST00000407031 1396 ntBASIC13.16□□□□□ -0.3
LINC00477Q96M19 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LINC00477Q96M19 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.16□□□□□ -0.3
LINC00477Q96M19 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms