Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC011506.1-201ENST00000474329 610 ntBASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 AC011298.2-201ENST00000617989 482 ntBASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 LINC00304-203ENST00000565008 1864 ntBASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.31■□□□□ 0.2
ZNF540Q8NDQ6 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 HLA-J-201ENST00000462773 1622 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 FAM207BP-201ENST00000447172 505 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 AL445228.2-201ENST00000605589 952 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 AC008622.2-201ENST00000617006 1229 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 AC116562.4-202ENST00000641738 218 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 AC008741.2-201ENST00000612792 3115 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 FLJ38576-201ENST00000623820 2459 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 LINC01126-201ENST00000623515 1646 ntBASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ZNF540Q8NDQ6 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 AC100803.2-201ENST00000562459 1963 ntBASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms