Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 CCR12P-201ENST00000446203 998 ntBASIC15.75■□□□□ 0.11
CCDC58Q4VC31 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 BX088651.1-201ENST00000540551 451 ntBASIC15.75■□□□□ 0.11
CCDC58Q4VC31 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC58Q4VC31 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 DDX43P3-201ENST00000441064 443 ntBASIC15.74■□□□□ 0.11
CCDC58Q4VC31 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 NFIC-211ENST00000641145 8399 ntBASIC15.74■□□□□ 0.11
CCDC58Q4VC31 AC092338.2-201ENST00000568827 1415 ntBASIC15.74■□□□□ 0.11
CCDC58Q4VC31 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC58Q4VC31 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 C8orf49-201ENST00000525043 1968 ntBASIC15.73■□□□□ 0.11
CCDC58Q4VC31 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 ABHD17AP1-201ENST00000358206 933 ntBASIC15.73■□□□□ 0.11
CCDC58Q4VC31 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 LINC00167-201ENST00000530583 1419 ntBASIC15.73■□□□□ 0.11
CCDC58Q4VC31 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC58Q4VC31 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.72■□□□□ 0.11
CCDC58Q4VC31 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms