Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 FAM197Y3-203ENST00000618346 717 ntBASIC18.7■□□□□ 0.58
SOX4Q06945 PGM5P2-202ENST00000637225 1043 ntBASIC18.7■□□□□ 0.58
SOX4Q06945 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SOX4Q06945 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.7■□□□□ 0.58
SOX4Q06945 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SOX4Q06945 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.7■□□□□ 0.58
SOX4Q06945 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.7■□□□□ 0.58
SOX4Q06945 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SOX4Q06945 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 LYSMD4-203ENST00000378904 2122 ntBASIC18.69■□□□□ 0.58
SOX4Q06945 PTCHD3P3-201ENST00000403073 906 ntBASIC18.69■□□□□ 0.58
SOX4Q06945 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 AC108073.2-201ENST00000464002 357 ntBASIC18.69■□□□□ 0.58
SOX4Q06945 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.69■□□□□ 0.58
SOX4Q06945 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.69■□□□□ 0.58
SOX4Q06945 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SOX4Q06945 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SOX4Q06945 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
SOX4Q06945 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.69■□□□□ 0.58
SOX4Q06945 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SOX4Q06945 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX4Q06945 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.68■□□□□ 0.58
SOX4Q06945 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SOX4Q06945 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SOX4Q06945 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.68■□□□□ 0.58
SOX4Q06945 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.68■□□□□ 0.58
SOX4Q06945 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SOX4Q06945 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.68■□□□□ 0.58
SOX4Q06945 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.68■□□□□ 0.58
SOX4Q06945 KRT18P3-201ENST00000451602 1288 ntBASIC18.68■□□□□ 0.58
SOX4Q06945 IGHV3-65-201ENST00000523210 341 ntBASIC18.68■□□□□ 0.58
SOX4Q06945 AC008667.4-201ENST00000607370 168 ntBASIC18.68■□□□□ 0.58
SOX4Q06945 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.68■□□□□ 0.58
SOX4Q06945 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SOX4Q06945 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX4Q06945 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 GPR89P-201ENST00000407924 1495 ntBASIC18.67■□□□□ 0.58
SOX4Q06945 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SOX4Q06945 AL591424.1-201ENST00000442569 1213 ntBASIC18.67■□□□□ 0.58
SOX4Q06945 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.67■□□□□ 0.58
SOX4Q06945 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX4Q06945 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX4Q06945 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX4Q06945 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.67■□□□□ 0.58
SOX4Q06945 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX4Q06945 AL805961.1-202ENST00000641562 540 ntBASIC18.67■□□□□ 0.58
SOX4Q06945 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
SOX4Q06945 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX4Q06945 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX4Q06945 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX4Q06945 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms