Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 LINC01238-205ENST00000567549 1107 ntBASIC16.93■□□□□ 0.3
HMGCS1Q01581 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.93■□□□□ 0.3
HMGCS1Q01581 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HMGCS1Q01581 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HMGCS1Q01581 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 MIR1224-201ENST00000408193 85 ntBASIC16.92■□□□□ 0.3
HMGCS1Q01581 AL645929.1-201ENST00000420084 975 ntBASIC16.92■□□□□ 0.3
HMGCS1Q01581 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 AC010331.1-201ENST00000611423 582 ntBASIC16.92■□□□□ 0.3
HMGCS1Q01581 AL590326.2-201ENST00000625139 305 ntBASIC16.92■□□□□ 0.3
HMGCS1Q01581 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HMGCS1Q01581 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
HMGCS1Q01581 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.91■□□□□ 0.3
HMGCS1Q01581 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
HMGCS1Q01581 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.91■□□□□ 0.3
HMGCS1Q01581 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
HMGCS1Q01581 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HMGCS1Q01581 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
HMGCS1Q01581 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms