Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.26■□□□□ 0.19
RNF4P78317 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.26■□□□□ 0.19
RNF4P78317 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
RNF4P78317 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
RNF4P78317 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
RNF4P78317 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RNF4P78317 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.26■□□□□ 0.19
RNF4P78317 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.25■□□□□ 0.19
RNF4P78317 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF4P78317 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 LINC00304-203ENST00000565008 1864 ntBASIC16.25■□□□□ 0.19
RNF4P78317 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.25■□□□□ 0.19
RNF4P78317 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 AC003669.1-201ENST00000334569 611 ntBASIC16.25■□□□□ 0.19
RNF4P78317 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.25■□□□□ 0.19
RNF4P78317 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.25■□□□□ 0.19
RNF4P78317 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 SPDYE21P-201ENST00000413323 827 ntBASIC16.25■□□□□ 0.19
RNF4P78317 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.25■□□□□ 0.19
RNF4P78317 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 SART3-203ENST00000546611 1184 ntBASIC16.25■□□□□ 0.19
RNF4P78317 STK25P1-201ENST00000585406 838 ntBASIC16.25■□□□□ 0.19
RNF4P78317 NKAPP1-205ENST00000585790 367 ntBASIC16.25■□□□□ 0.19
RNF4P78317 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.25■□□□□ 0.19
RNF4P78317 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.25■□□□□ 0.19
RNF4P78317 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
RNF4P78317 SIGLEC16-201ENST00000599858 1437 ntBASIC16.25■□□□□ 0.19
RNF4P78317 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RNF4P78317 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RNF4P78317 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
RNF4P78317 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 AL355312.1-201ENST00000407115 2176 ntBASIC16.24■□□□□ 0.19
RNF4P78317 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 NOC2LP2-201ENST00000407594 1944 ntBASIC16.24■□□□□ 0.19
RNF4P78317 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF4P78317 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF4P78317 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF4P78317 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 KLF4P1-201ENST00000412782 1185 ntBASIC16.24■□□□□ 0.19
RNF4P78317 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 AL020989.1-201ENST00000422979 469 ntBASIC16.24■□□□□ 0.19
RNF4P78317 AC009078.2-202ENST00000463353 338 ntBASIC16.24■□□□□ 0.19
RNF4P78317 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF4P78317 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.24■□□□□ 0.19
RNF4P78317 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.24■□□□□ 0.19
RNF4P78317 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.24■□□□□ 0.19
RNF4P78317 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.24■□□□□ 0.19
RNF4P78317 AC064862.7-201ENST00000604520 867 ntBASIC16.24■□□□□ 0.19
RNF4P78317 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 AC073592.4-201ENST00000623827 446 ntBASIC16.24■□□□□ 0.19
RNF4P78317 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 AC134043.2-201ENST00000624206 2238 ntBASIC16.24■□□□□ 0.19
RNF4P78317 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.24■□□□□ 0.19
RNF4P78317 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.24■□□□□ 0.19
RNF4P78317 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF4P78317 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF4P78317 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RNF4P78317 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RNF4P78317 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.23■□□□□ 0.19
RNF4P78317 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RNF4P78317 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms