Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.25■□□□□ 0.35
PKNOX1P55347 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
PKNOX1P55347 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.25■□□□□ 0.35
PKNOX1P55347 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
PKNOX1P55347 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 AC112698.1-201ENST00000510299 916 ntBASIC17.25■□□□□ 0.35
PKNOX1P55347 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.25■□□□□ 0.35
PKNOX1P55347 AC010203.1-204ENST00000548782 407 ntBASIC17.25■□□□□ 0.35
PKNOX1P55347 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.25■□□□□ 0.35
PKNOX1P55347 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.25■□□□□ 0.35
PKNOX1P55347 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PKNOX1P55347 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.25■□□□□ 0.35
PKNOX1P55347 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.25■□□□□ 0.35
PKNOX1P55347 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.24■□□□□ 0.35
PKNOX1P55347 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PKNOX1P55347 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.24■□□□□ 0.35
PKNOX1P55347 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.24■□□□□ 0.35
PKNOX1P55347 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
PKNOX1P55347 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PKNOX1P55347 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
PKNOX1P55347 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PKNOX1P55347 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PKNOX1P55347 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.24■□□□□ 0.35
PKNOX1P55347 BX276092.7-203ENST00000637198 1536 ntBASIC17.24■□□□□ 0.35
PKNOX1P55347 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.24■□□□□ 0.35
PKNOX1P55347 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.24■□□□□ 0.35
PKNOX1P55347 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.24■□□□□ 0.35
PKNOX1P55347 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PKNOX1P55347 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
PKNOX1P55347 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PKNOX1P55347 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.23■□□□□ 0.35
PKNOX1P55347 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.23■□□□□ 0.35
PKNOX1P55347 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 SPDYE15P-201ENST00000424157 909 ntBASIC17.23■□□□□ 0.35
PKNOX1P55347 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PKNOX1P55347 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.23■□□□□ 0.35
PKNOX1P55347 BX664615.1-201ENST00000443558 458 ntBASIC17.23■□□□□ 0.35
PKNOX1P55347 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.23■□□□□ 0.35
PKNOX1P55347 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PKNOX1P55347 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.23■□□□□ 0.35
PKNOX1P55347 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PKNOX1P55347 AC011558.1-201ENST00000623459 338 ntBASIC17.23■□□□□ 0.35
PKNOX1P55347 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.23■□□□□ 0.35
PKNOX1P55347 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.23■□□□□ 0.35
PKNOX1P55347 PCDH8P1-201ENST00000428983 2773 ntBASIC17.23■□□□□ 0.35
PKNOX1P55347 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PKNOX1P55347 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PKNOX1P55347 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.22■□□□□ 0.35
PKNOX1P55347 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.22■□□□□ 0.35
PKNOX1P55347 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PKNOX1P55347 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PKNOX1P55347 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms