Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 KLF4P1-201ENST00000412782 1185 ntBASIC18.23■□□□□ 0.51
PTPN9P43378 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.23■□□□□ 0.51
PTPN9P43378 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.23■□□□□ 0.51
PTPN9P43378 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.23■□□□□ 0.51
PTPN9P43378 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.23■□□□□ 0.51
PTPN9P43378 AL121772.3-201ENST00000610840 674 ntBASIC18.23■□□□□ 0.51
PTPN9P43378 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PTPN9P43378 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.23■□□□□ 0.51
PTPN9P43378 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
PTPN9P43378 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
PTPN9P43378 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PTPN9P43378 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PTPN9P43378 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN9P43378 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN9P43378 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
PTPN9P43378 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 TSPY19P-201ENST00000418461 509 ntBASIC18.22■□□□□ 0.51
PTPN9P43378 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.22■□□□□ 0.51
PTPN9P43378 TSPY18P-201ENST00000441642 509 ntBASIC18.22■□□□□ 0.51
PTPN9P43378 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 AC108860.2-201ENST00000562760 2183 ntBASIC18.22■□□□□ 0.51
PTPN9P43378 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN9P43378 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PTPN9P43378 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PTPN9P43378 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.22■□□□□ 0.51
PTPN9P43378 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
PTPN9P43378 AC116353.5-201ENST00000638148 1699 ntBASIC18.22■□□□□ 0.51
PTPN9P43378 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.21■□□□□ 0.51
PTPN9P43378 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.21■□□□□ 0.51
PTPN9P43378 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
PTPN9P43378 KRT18P31-201ENST00000506277 1292 ntBASIC18.21■□□□□ 0.51
PTPN9P43378 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.21■□□□□ 0.51
PTPN9P43378 PRELID1P1-202ENST00000567272 903 ntBASIC18.21■□□□□ 0.51
PTPN9P43378 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
PTPN9P43378 AC073592.4-201ENST00000623827 446 ntBASIC18.21■□□□□ 0.51
PTPN9P43378 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PTPN9P43378 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
PTPN9P43378 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PTPN9P43378 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.21■□□□□ 0.51
PTPN9P43378 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.21■□□□□ 0.51
PTPN9P43378 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PTPN9P43378 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
PTPN9P43378 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PTPN9P43378 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.2■□□□□ 0.5
PTPN9P43378 SPDYE21P-201ENST00000413323 827 ntBASIC18.2■□□□□ 0.5
PTPN9P43378 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN9P43378 AC132008.2-207ENST00000454517 770 ntBASIC18.2■□□□□ 0.5
PTPN9P43378 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.2■□□□□ 0.5
PTPN9P43378 AC106795.1-205ENST00000512851 1056 ntBASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms