Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HNF4AP41235 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.04■□□□□ 0.32
HNF4AP41235 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
HNF4AP41235 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 AL023806.1-201ENST00000603994 1649 ntBASIC17.04■□□□□ 0.32
HNF4AP41235 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HNF4AP41235 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
HNF4AP41235 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.04■□□□□ 0.32
HNF4AP41235 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.04■□□□□ 0.32
HNF4AP41235 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.04■□□□□ 0.32
HNF4AP41235 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.04■□□□□ 0.32
HNF4AP41235 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.04■□□□□ 0.32
HNF4AP41235 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HNF4AP41235 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
HNF4AP41235 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.04■□□□□ 0.32
HNF4AP41235 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 PP12613-201ENST00000424958 2230 ntBASIC17.04■□□□□ 0.32
HNF4AP41235 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HNF4AP41235 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.04■□□□□ 0.32
HNF4AP41235 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.03■□□□□ 0.32
HNF4AP41235 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.03■□□□□ 0.32
HNF4AP41235 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HNF4AP41235 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HNF4AP41235 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.03■□□□□ 0.32
HNF4AP41235 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 COX5BP2-201ENST00000392354 334 ntBASIC17.03■□□□□ 0.32
HNF4AP41235 LINC00265-3P-201ENST00000447588 903 ntBASIC17.03■□□□□ 0.32
HNF4AP41235 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
HNF4AP41235 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.03■□□□□ 0.32
HNF4AP41235 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HNF4AP41235 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HNF4AP41235 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 AL645608.8-201ENST00000606034 2086 ntBASIC17.03■□□□□ 0.32
HNF4AP41235 AC141586.5-201ENST00000624546 2050 ntBASIC17.03■□□□□ 0.32
HNF4AP41235 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HNF4AP41235 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HNF4AP41235 SIRPAP1-201ENST00000448467 1770 ntBASIC17.02■□□□□ 0.32
HNF4AP41235 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HNF4AP41235 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.02■□□□□ 0.32
HNF4AP41235 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.02■□□□□ 0.32
HNF4AP41235 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.02■□□□□ 0.32
HNF4AP41235 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.02■□□□□ 0.32
HNF4AP41235 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.32
HNF4AP41235 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HNF4AP41235 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.02■□□□□ 0.32
HNF4AP41235 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HNF4AP41235 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms