Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
COL18A1P39060 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 AC140878.1-201ENST00000565277 250 ntBASIC22.91■■□□□ 1.26
COL18A1P39060 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL18A1P39060 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL18A1P39060 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL18A1P39060 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL18A1P39060 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC22.9■■□□□ 1.26
COL18A1P39060 TAF8-206ENST00000472818 719 ntTSL 2 BASIC22.9■■□□□ 1.26
COL18A1P39060 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
COL18A1P39060 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC22.9■■□□□ 1.26
COL18A1P39060 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC22.9■■□□□ 1.26
COL18A1P39060 CD7-202ENST00000578509 925 ntTSL 3 BASIC22.9■■□□□ 1.26
COL18A1P39060 BSG-214ENST00000614867 960 ntTSL 3 BASIC22.9■■□□□ 1.26
COL18A1P39060 RAB34-224ENST00000636513 888 ntTSL 5 BASIC22.9■■□□□ 1.26
COL18A1P39060 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL18A1P39060 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL18A1P39060 FLJ13224-201ENST00000313737 1514 ntBASIC22.9■■□□□ 1.26
COL18A1P39060 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC22.9■■□□□ 1.26
COL18A1P39060 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC22.9■■□□□ 1.26
COL18A1P39060 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
COL18A1P39060 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
COL18A1P39060 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
COL18A1P39060 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL18A1P39060 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
COL18A1P39060 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC22.89■■□□□ 1.26
COL18A1P39060 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL18A1P39060 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC22.89■■□□□ 1.26
COL18A1P39060 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
COL18A1P39060 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
COL18A1P39060 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC22.89■■□□□ 1.26
COL18A1P39060 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
COL18A1P39060 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC22.89■■□□□ 1.26
COL18A1P39060 AC092580.3-201ENST00000430932 139 ntBASIC22.89■■□□□ 1.26
COL18A1P39060 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC22.89■■□□□ 1.26
COL18A1P39060 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC22.89■■□□□ 1.26
COL18A1P39060 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC22.89■■□□□ 1.26
COL18A1P39060 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 LINC00304-203ENST00000565008 1864 ntBASIC22.89■■□□□ 1.25
COL18A1P39060 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC22.89■■□□□ 1.25
COL18A1P39060 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
COL18A1P39060 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
COL18A1P39060 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC22.89■■□□□ 1.25
COL18A1P39060 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC22.89■■□□□ 1.25
COL18A1P39060 HLA-J-202ENST00000469281 1241 ntBASIC22.89■■□□□ 1.25
COL18A1P39060 POLD4-211ENST00000539074 714 ntTSL 3 BASIC22.89■■□□□ 1.25
COL18A1P39060 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC22.89■■□□□ 1.25
COL18A1P39060 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC22.89■■□□□ 1.25
COL18A1P39060 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
COL18A1P39060 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC22.88■■□□□ 1.25
COL18A1P39060 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
COL18A1P39060 MADD-208ENST00000405573 1823 ntTSL 5 BASIC22.88■■□□□ 1.25
COL18A1P39060 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
COL18A1P39060 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL18A1P39060 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC22.88■■□□□ 1.25
COL18A1P39060 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC22.88■■□□□ 1.25
COL18A1P39060 HNRNPFP1-201ENST00000391730 1133 ntBASIC22.88■■□□□ 1.25
COL18A1P39060 CENPM-205ENST00000404067 905 ntTSL 3 BASIC22.88■■□□□ 1.25
COL18A1P39060 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL18A1P39060 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
COL18A1P39060 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC22.88■■□□□ 1.25
COL18A1P39060 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
COL18A1P39060 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC22.88■■□□□ 1.25
COL18A1P39060 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
COL18A1P39060 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
COL18A1P39060 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL18A1P39060 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC22.87■■□□□ 1.25
COL18A1P39060 HMGA1P7-201ENST00000406908 502 ntBASIC22.87■■□□□ 1.25
COL18A1P39060 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
COL18A1P39060 TREML5P-201ENST00000421694 576 ntBASIC22.87■■□□□ 1.25
COL18A1P39060 AL671277.1-201ENST00000429656 993 ntBASIC22.87■■□□□ 1.25
COL18A1P39060 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC22.87■■□□□ 1.25
COL18A1P39060 SPCS2P4-201ENST00000436160 681 ntBASIC22.87■■□□□ 1.25
COL18A1P39060 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC22.87■■□□□ 1.25
COL18A1P39060 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
COL18A1P39060 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
COL18A1P39060 AC190387.1-201ENST00000551683 408 ntBASIC22.87■■□□□ 1.25
COL18A1P39060 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
COL18A1P39060 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC22.87■■□□□ 1.25
COL18A1P39060 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL18A1P39060 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
COL18A1P39060 TUBB3P1-201ENST00000405796 1332 ntBASIC22.87■■□□□ 1.25
COL18A1P39060 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 AC107890.1-201ENST00000422478 521 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 AC005237.2-201ENST00000434368 219 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 FAM207CP-201ENST00000443486 507 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC22.86■■□□□ 1.25
COL18A1P39060 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL18A1P39060 MIR4515-201ENST00000584082 81 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC22.86■■□□□ 1.25
COL18A1P39060 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms