Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC21.11■□□□□ 0.97
BRCA1P38398 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
BRCA1P38398 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
BRCA1P38398 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.1■□□□□ 0.97
BRCA1P38398 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.1■□□□□ 0.97
BRCA1P38398 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
BRCA1P38398 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC21.1■□□□□ 0.97
BRCA1P38398 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.1■□□□□ 0.97
BRCA1P38398 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
BRCA1P38398 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC21.1■□□□□ 0.97
BRCA1P38398 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.1■□□□□ 0.97
BRCA1P38398 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.1■□□□□ 0.97
BRCA1P38398 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
BRCA1P38398 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.1■□□□□ 0.97
BRCA1P38398 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
BRCA1P38398 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.1■□□□□ 0.97
BRCA1P38398 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.1■□□□□ 0.97
BRCA1P38398 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.09■□□□□ 0.97
BRCA1P38398 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.09■□□□□ 0.97
BRCA1P38398 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 KRT17P7-201ENST00000451704 1104 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 MIR3909-201ENST00000579518 119 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 AL138828.2-201ENST00000615812 383 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.09■□□□□ 0.97
BRCA1P38398 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
BRCA1P38398 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 AFG3L1P-217ENST00000557444 2447 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
BRCA1P38398 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 AC009477.1-201ENST00000452936 217 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.09■□□□□ 0.97
BRCA1P38398 CDK4-206ENST00000549606 558 ntTSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 AC140912.1-201ENST00000577171 1054 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 MIR4453-201ENST00000584019 89 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.09■□□□□ 0.97
BRCA1P38398 AC004790.1-201ENST00000612686 536 ntBASIC21.09■□□□□ 0.97
BRCA1P38398 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
BRCA1P38398 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRCA1P38398 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRCA1P38398 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
BRCA1P38398 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC21.08■□□□□ 0.97
BRCA1P38398 AL031598.1-201ENST00000561511 1773 ntBASIC21.08■□□□□ 0.97
BRCA1P38398 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC21.08■□□□□ 0.97
BRCA1P38398 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.08■□□□□ 0.97
BRCA1P38398 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRCA1P38398 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
BRCA1P38398 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRCA1P38398 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC21.08■□□□□ 0.97
BRCA1P38398 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
BRCA1P38398 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC21.08■□□□□ 0.97
BRCA1P38398 AC017083.2-201ENST00000608069 979 ntBASIC21.08■□□□□ 0.97
BRCA1P38398 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.08■□□□□ 0.97
BRCA1P38398 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
BRCA1P38398 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
BRCA1P38398 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
BRCA1P38398 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BRCA1P38398 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.08■□□□□ 0.96
BRCA1P38398 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
BRCA1P38398 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
BRCA1P38398 AC073592.3-201ENST00000625118 1834 ntBASIC21.07■□□□□ 0.96
BRCA1P38398 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.07■□□□□ 0.96
BRCA1P38398 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC21.07■□□□□ 0.96
BRCA1P38398 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BRCA1P38398 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC21.07■□□□□ 0.96
BRCA1P38398 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BRCA1P38398 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.07■□□□□ 0.96
BRCA1P38398 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRCA1P38398 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BRCA1P38398 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRCA1P38398 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC21.07■□□□□ 0.96
BRCA1P38398 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.07■□□□□ 0.96
BRCA1P38398 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BRCA1P38398 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC21.07■□□□□ 0.96
BRCA1P38398 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms