Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 AL355306.1-201ENST00000415580 579 ntBASIC16.69■□□□□ 0.26
COL5A1P20908 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.69■□□□□ 0.26
COL5A1P20908 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.69■□□□□ 0.26
COL5A1P20908 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.69■□□□□ 0.26
COL5A1P20908 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.69■□□□□ 0.26
COL5A1P20908 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.69■□□□□ 0.26
COL5A1P20908 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 AP001059.3-201ENST00000619053 235 ntBASIC16.69■□□□□ 0.26
COL5A1P20908 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
COL5A1P20908 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.69■□□□□ 0.26
COL5A1P20908 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.69■□□□□ 0.26
COL5A1P20908 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
COL5A1P20908 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.69■□□□□ 0.26
COL5A1P20908 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
COL5A1P20908 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 PI4KAP1-204ENST00000612579 1703 ntBASIC16.68■□□□□ 0.26
COL5A1P20908 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.68■□□□□ 0.26
COL5A1P20908 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
COL5A1P20908 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 PMS2P4-201ENST00000412466 1052 ntBASIC16.68■□□□□ 0.26
COL5A1P20908 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.68■□□□□ 0.26
COL5A1P20908 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 AC093214.1-201ENST00000511688 1107 ntBASIC16.68■□□□□ 0.26
COL5A1P20908 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.68■□□□□ 0.26
COL5A1P20908 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
COL5A1P20908 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL5A1P20908 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.67■□□□□ 0.26
COL5A1P20908 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.67■□□□□ 0.26
COL5A1P20908 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.67■□□□□ 0.26
COL5A1P20908 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.67■□□□□ 0.26
COL5A1P20908 AC138761.1-201ENST00000584393 385 ntBASIC16.67■□□□□ 0.26
COL5A1P20908 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.67■□□□□ 0.26
COL5A1P20908 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
COL5A1P20908 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL5A1P20908 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL5A1P20908 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.66■□□□□ 0.26
COL5A1P20908 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL5A1P20908 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL5A1P20908 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms