Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 RCN1P2-201ENST00000398357 915 ntBASIC17.5■□□□□ 0.39
MSH3P20585 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 KRT16P4-201ENST00000453883 522 ntBASIC17.5■□□□□ 0.39
MSH3P20585 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.5■□□□□ 0.39
MSH3P20585 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.5■□□□□ 0.39
MSH3P20585 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.5■□□□□ 0.39
MSH3P20585 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.5■□□□□ 0.39
MSH3P20585 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.5■□□□□ 0.39
MSH3P20585 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.5■□□□□ 0.39
MSH3P20585 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.5■□□□□ 0.39
MSH3P20585 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
MSH3P20585 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH3P20585 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
MSH3P20585 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH3P20585 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 AC122714.2-201ENST00000502787 707 ntBASIC17.49■□□□□ 0.39
MSH3P20585 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.49■□□□□ 0.39
MSH3P20585 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.49■□□□□ 0.39
MSH3P20585 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.49■□□□□ 0.39
MSH3P20585 AC012313.10-201ENST00000623509 926 ntBASIC17.49■□□□□ 0.39
MSH3P20585 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.49■□□□□ 0.39
MSH3P20585 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
MSH3P20585 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
MSH3P20585 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.49■□□□□ 0.39
MSH3P20585 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
MSH3P20585 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
MSH3P20585 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH3P20585 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
MSH3P20585 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
MSH3P20585 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH3P20585 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.48■□□□□ 0.39
MSH3P20585 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.48■□□□□ 0.39
MSH3P20585 AC091304.2-201ENST00000564639 760 ntBASIC17.48■□□□□ 0.39
MSH3P20585 MIR5100-201ENST00000579544 119 ntBASIC17.48■□□□□ 0.39
MSH3P20585 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.48■□□□□ 0.39
MSH3P20585 AL591684.3-201ENST00000605187 298 ntBASIC17.48■□□□□ 0.39
MSH3P20585 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
MSH3P20585 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.48■□□□□ 0.39
MSH3P20585 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
MSH3P20585 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
MSH3P20585 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSH3P20585 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
MSH3P20585 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
MSH3P20585 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 INTS4P1-201ENST00000438455 1935 ntBASIC17.47■□□□□ 0.39
MSH3P20585 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
MSH3P20585 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.47■□□□□ 0.39
MSH3P20585 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSH3P20585 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms