Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.98■□□□□ 0.47
VCANP13611 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.98■□□□□ 0.47
VCANP13611 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.98■□□□□ 0.47
VCANP13611 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VCANP13611 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.98■□□□□ 0.47
VCANP13611 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.97■□□□□ 0.47
VCANP13611 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VCANP13611 AC140658.5-201ENST00000438532 169 ntBASIC17.97■□□□□ 0.47
VCANP13611 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.97■□□□□ 0.47
VCANP13611 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.97■□□□□ 0.47
VCANP13611 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.97■□□□□ 0.47
VCANP13611 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.97■□□□□ 0.47
VCANP13611 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.97■□□□□ 0.47
VCANP13611 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
VCANP13611 AC008735.3-201ENST00000596646 500 ntBASIC17.97■□□□□ 0.47
VCANP13611 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
VCANP13611 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
VCANP13611 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
VCANP13611 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.97■□□□□ 0.47
VCANP13611 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.97■□□□□ 0.47
VCANP13611 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.97■□□□□ 0.47
VCANP13611 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VCANP13611 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
VCANP13611 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.96■□□□□ 0.47
VCANP13611 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
VCANP13611 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.96■□□□□ 0.47
VCANP13611 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 MIR1908-201ENST00000410394 80 ntBASIC17.96■□□□□ 0.47
VCANP13611 FXNP2-201ENST00000411625 547 ntBASIC17.96■□□□□ 0.47
VCANP13611 AC241585.1-201ENST00000433527 519 ntBASIC17.96■□□□□ 0.47
VCANP13611 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.96■□□□□ 0.47
VCANP13611 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.96■□□□□ 0.47
VCANP13611 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.96■□□□□ 0.47
VCANP13611 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.96■□□□□ 0.47
VCANP13611 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
VCANP13611 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.96■□□□□ 0.47
VCANP13611 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.96■□□□□ 0.47
VCANP13611 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
VCANP13611 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VCANP13611 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VCANP13611 MIR663B-201ENST00000408361 115 ntBASIC17.96■□□□□ 0.46
VCANP13611 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.96■□□□□ 0.46
VCANP13611 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
VCANP13611 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
VCANP13611 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.95■□□□□ 0.46
VCANP13611 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.95■□□□□ 0.46
VCANP13611 CXCL1P1-201ENST00000502804 216 ntBASIC17.95■□□□□ 0.46
VCANP13611 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.95■□□□□ 0.46
VCANP13611 AC104794.3-201ENST00000566840 1248 ntBASIC17.95■□□□□ 0.46
VCANP13611 AC008494.3-201ENST00000606615 944 ntBASIC17.95■□□□□ 0.46
VCANP13611 AC026740.1-201ENST00000607068 791 ntBASIC17.95■□□□□ 0.46
VCANP13611 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.95■□□□□ 0.46
VCANP13611 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 AC097637.2-201ENST00000624096 1997 ntBASIC17.95■□□□□ 0.46
VCANP13611 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.95■□□□□ 0.46
VCANP13611 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.95■□□□□ 0.46
VCANP13611 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.95■□□□□ 0.46
VCANP13611 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
VCANP13611 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCANP13611 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms