Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 AC093677.2-201ENST00000600169 1863 ntBASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 CBR1-202ENST00000399191 838 ntTSL 3 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 AC239800.4-201ENST00000603712 296 ntBASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC23.13■■□□□ 1.29
CSB-PGBD3P0DP91 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 AL590787.1-201ENST00000568856 1315 ntBASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 FAM185BP-201ENST00000443595 716 ntBASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 GREM1-201ENST00000560677 623 ntTSL 4 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSB-PGBD3P0DP91 AL121761.2-201ENST00000598007 1648 ntBASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 FAM86GP-201ENST00000448322 971 ntBASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 TIMM8BP1-201ENST00000452384 211 ntBASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 AC112191.1-201ENST00000523689 701 ntBASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 AC005498.2-205ENST00000593218 784 ntBASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSB-PGBD3P0DP91 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 ACTG1P4-201ENST00000425123 1122 ntBASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 PAWRP1-201ENST00000451083 565 ntBASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.1■■□□□ 1.29
CSB-PGBD3P0DP91 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms