Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.49■□□□□ 0.39
COL4A2P08572 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.49■□□□□ 0.39
COL4A2P08572 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 AC243562.1-201ENST00000560672 389 ntBASIC17.49■□□□□ 0.39
COL4A2P08572 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
COL4A2P08572 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL4A2P08572 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A2P08572 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A2P08572 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 AKAP8P1-201ENST00000434743 1349 ntBASIC17.48■□□□□ 0.39
COL4A2P08572 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A2P08572 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A2P08572 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A2P08572 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A2P08572 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A2P08572 UGT1A2P-201ENST00000454886 866 ntBASIC17.48■□□□□ 0.39
COL4A2P08572 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 DUX4L27-201ENST00000554796 1261 ntBASIC17.48■□□□□ 0.39
COL4A2P08572 AC087641.1-201ENST00000557561 1021 ntBASIC17.48■□□□□ 0.39
COL4A2P08572 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A2P08572 AL645728.2-201ENST00000641974 660 ntBASIC17.48■□□□□ 0.39
COL4A2P08572 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 AL138781.2-201ENST00000617896 1843 ntBASIC17.48■□□□□ 0.39
COL4A2P08572 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL4A2P08572 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A2P08572 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A2P08572 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A2P08572 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL4A2P08572 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
COL4A2P08572 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL4A2P08572 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.47■□□□□ 0.39
COL4A2P08572 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.47■□□□□ 0.39
COL4A2P08572 CNN2P2-201ENST00000443536 909 ntBASIC17.47■□□□□ 0.39
COL4A2P08572 CNN2P3-201ENST00000450201 906 ntBASIC17.47■□□□□ 0.39
COL4A2P08572 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.47■□□□□ 0.39
COL4A2P08572 DUX4L17-201ENST00000557360 1267 ntBASIC17.47■□□□□ 0.39
COL4A2P08572 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A2P08572 AL009183.1-201ENST00000603760 355 ntBASIC17.47■□□□□ 0.39
COL4A2P08572 AL136317.3-201ENST00000618497 906 ntBASIC17.47■□□□□ 0.39
COL4A2P08572 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A2P08572 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL4A2P08572 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL4A2P08572 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A2P08572 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.47■□□□□ 0.39
COL4A2P08572 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A2P08572 SPDYE14P-201ENST00000442619 822 ntBASIC17.47■□□□□ 0.39
COL4A2P08572 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A2P08572 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A2P08572 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A2P08572 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A2P08572 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A2P08572 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A2P08572 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A2P08572 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms