Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TP53TG3HP-202ENST00000569755 579 ntBASIC10.82□□□□□ -0.68
APOBP04114 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
APOBP04114 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC10.82□□□□□ -0.68
APOBP04114 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
APOBP04114 RN7SL589P-201ENST00000481268 310 ntBASIC10.82□□□□□ -0.68
APOBP04114 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC10.82□□□□□ -0.68
APOBP04114 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC10.82□□□□□ -0.68
APOBP04114 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC10.82□□□□□ -0.68
APOBP04114 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC10.81□□□□□ -0.68
APOBP04114 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC10.81□□□□□ -0.68
APOBP04114 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC10.81□□□□□ -0.68
APOBP04114 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC10.81□□□□□ -0.68
APOBP04114 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC10.81□□□□□ -0.68
APOBP04114 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC10.81□□□□□ -0.68
APOBP04114 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
APOBP04114 NKG7-205ENST00000600427 520 ntTSL 3 BASIC10.81□□□□□ -0.68
APOBP04114 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC10.81□□□□□ -0.68
APOBP04114 CU639417.3-201ENST00000624240 1404 ntBASIC10.81□□□□□ -0.68
APOBP04114 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 AC022144.1-201ENST00000602255 1580 ntBASIC10.81□□□□□ -0.68
APOBP04114 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC10.81□□□□□ -0.68
APOBP04114 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC10.81□□□□□ -0.68
APOBP04114 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
APOBP04114 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC10.81□□□□□ -0.68
APOBP04114 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC10.8□□□□□ -0.68
APOBP04114 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC10.8□□□□□ -0.68
APOBP04114 AC005237.2-201ENST00000434368 219 ntBASIC10.8□□□□□ -0.68
APOBP04114 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 AL358472.5-202ENST00000641448 1267 ntBASIC10.8□□□□□ -0.68
APOBP04114 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
APOBP04114 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
APOBP04114 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
APOBP04114 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
APOBP04114 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 TMEM14DP-201ENST00000422205 345 ntBASIC10.8□□□□□ -0.68
APOBP04114 FAM86C2P-203ENST00000528684 1004 ntBASIC10.8□□□□□ -0.68
APOBP04114 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 CDK4-206ENST00000549606 558 ntTSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC10.8□□□□□ -0.68
APOBP04114 MIR6080-201ENST00000617359 66 ntBASIC10.8□□□□□ -0.68
APOBP04114 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
APOBP04114 AC138969.3-201ENST00000546612 1459 ntBASIC10.8□□□□□ -0.68
APOBP04114 AC138932.2-201ENST00000548268 1459 ntBASIC10.8□□□□□ -0.68
APOBP04114 AC126755.4-201ENST00000549796 1459 ntBASIC10.8□□□□□ -0.68
APOBP04114 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC10.8□□□□□ -0.68
APOBP04114 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC10.8□□□□□ -0.68
APOBP04114 AC140878.1-201ENST00000565277 250 ntBASIC10.8□□□□□ -0.68
APOBP04114 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
APOBP04114 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
APOBP04114 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC10.8□□□□□ -0.68
APOBP04114 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC10.8□□□□□ -0.68
APOBP04114 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC10.8□□□□□ -0.68
APOBP04114 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC10.8□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms