Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 MINOS1P3-201ENST00000457048 203 ntBASIC20.3■□□□□ 0.84
CTDNEP1O95476 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 AC092329.2-201ENST00000598402 547 ntBASIC20.3■□□□□ 0.84
CTDNEP1O95476 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 AC093525.9-201ENST00000624961 1746 ntBASIC20.3■□□□□ 0.84
CTDNEP1O95476 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTDNEP1O95476 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CTDNEP1O95476 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 AC114341.1-201ENST00000618070 349 ntBASIC20.29■□□□□ 0.84
CTDNEP1O95476 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 PMPCAP1-201ENST00000508114 1576 ntBASIC20.29■□□□□ 0.84
CTDNEP1O95476 AC009336.1-201ENST00000608941 1553 ntBASIC20.29■□□□□ 0.84
CTDNEP1O95476 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
CTDNEP1O95476 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTDNEP1O95476 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTDNEP1O95476 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDNEP1O95476 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDNEP1O95476 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDNEP1O95476 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 AC012615.1-201ENST00000565797 1299 ntBASIC20.28■□□□□ 0.84
CTDNEP1O95476 AC111152.3-201ENST00000569699 673 ntBASIC20.28■□□□□ 0.84
CTDNEP1O95476 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTDNEP1O95476 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 AL135999.2-201ENST00000622438 1686 ntBASIC20.28■□□□□ 0.84
CTDNEP1O95476 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDNEP1O95476 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTDNEP1O95476 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.28■□□□□ 0.84
CTDNEP1O95476 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.27■□□□□ 0.84
CTDNEP1O95476 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.27■□□□□ 0.84
CTDNEP1O95476 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.27■□□□□ 0.84
CTDNEP1O95476 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.27■□□□□ 0.84
CTDNEP1O95476 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CTDNEP1O95476 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.27■□□□□ 0.84
CTDNEP1O95476 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 AC099398.1-201ENST00000567919 2776 ntBASIC20.27■□□□□ 0.84
CTDNEP1O95476 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTDNEP1O95476 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms