Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL671277.2-201ENST00000458060 996 ntBASIC17.17■□□□□ 0.34
SIX3O95343 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX3O95343 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
SIX3O95343 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX3O95343 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX3O95343 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX3O95343 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX3O95343 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.17■□□□□ 0.34
SIX3O95343 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SIX3O95343 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX3O95343 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.17■□□□□ 0.34
SIX3O95343 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX3O95343 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.17■□□□□ 0.34
SIX3O95343 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.17■□□□□ 0.34
SIX3O95343 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SIX3O95343 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SIX3O95343 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
SIX3O95343 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX3O95343 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.16■□□□□ 0.34
SIX3O95343 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX3O95343 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX3O95343 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX3O95343 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX3O95343 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.16■□□□□ 0.34
SIX3O95343 AL645929.1-201ENST00000420084 975 ntBASIC17.16■□□□□ 0.34
SIX3O95343 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX3O95343 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX3O95343 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX3O95343 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
SIX3O95343 AL139327.4-201ENST00000612362 153 ntBASIC17.16■□□□□ 0.34
SIX3O95343 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.16■□□□□ 0.34
SIX3O95343 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX3O95343 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.16■□□□□ 0.34
SIX3O95343 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.16■□□□□ 0.34
SIX3O95343 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 AC060834.1-201ENST00000443027 2032 ntBASIC17.16■□□□□ 0.34
SIX3O95343 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SIX3O95343 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SIX3O95343 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SIX3O95343 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SIX3O95343 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SIX3O95343 DUX4L26-201ENST00000489078 1255 ntBASIC17.15■□□□□ 0.34
SIX3O95343 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.15■□□□□ 0.34
SIX3O95343 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SIX3O95343 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.15■□□□□ 0.34
SIX3O95343 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SIX3O95343 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
SIX3O95343 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX3O95343 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SIX3O95343 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.14■□□□□ 0.34
SIX3O95343 AL121761.2-201ENST00000598007 1648 ntBASIC17.14■□□□□ 0.33
SIX3O95343 AC016396.2-201ENST00000562575 1417 ntBASIC17.14■□□□□ 0.33
SIX3O95343 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX3O95343 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX3O95343 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX3O95343 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SIX3O95343 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX3O95343 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SIX3O95343 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms