Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.55■□□□□ 0.4
LDB2O43679 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.55■□□□□ 0.4
LDB2O43679 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB2O43679 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB2O43679 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.55■□□□□ 0.4
LDB2O43679 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB2O43679 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
LDB2O43679 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB2O43679 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB2O43679 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
LDB2O43679 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB2O43679 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.54■□□□□ 0.4
LDB2O43679 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.54■□□□□ 0.4
LDB2O43679 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
LDB2O43679 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.54■□□□□ 0.4
LDB2O43679 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.54■□□□□ 0.4
LDB2O43679 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.54■□□□□ 0.4
LDB2O43679 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.54■□□□□ 0.4
LDB2O43679 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.54■□□□□ 0.4
LDB2O43679 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB2O43679 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB2O43679 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.54■□□□□ 0.4
LDB2O43679 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB2O43679 LTB4R2-202ENST00000528054 3092 ntBASIC17.54■□□□□ 0.4
LDB2O43679 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB2O43679 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB2O43679 AC132938.5-201ENST00000624980 1813 ntBASIC17.54■□□□□ 0.4
LDB2O43679 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
LDB2O43679 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LDB2O43679 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB2O43679 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.53■□□□□ 0.4
LDB2O43679 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 HCG4P8-203ENST00000443049 980 ntBASIC17.53■□□□□ 0.4
LDB2O43679 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
LDB2O43679 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.53■□□□□ 0.4
LDB2O43679 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.53■□□□□ 0.4
LDB2O43679 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.53■□□□□ 0.4
LDB2O43679 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB2O43679 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB2O43679 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.52■□□□□ 0.4
LDB2O43679 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LDB2O43679 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.52■□□□□ 0.4
LDB2O43679 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.52■□□□□ 0.4
LDB2O43679 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.52■□□□□ 0.4
LDB2O43679 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.52■□□□□ 0.4
LDB2O43679 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LDB2O43679 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LDB2O43679 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.52■□□□□ 0.4
LDB2O43679 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.52■□□□□ 0.4
LDB2O43679 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.52■□□□□ 0.4
LDB2O43679 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.52■□□□□ 0.4
LDB2O43679 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.52■□□□□ 0.4
LDB2O43679 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.52■□□□□ 0.4
LDB2O43679 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB2O43679 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
LDB2O43679 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
LDB2O43679 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LDB2O43679 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
LDB2O43679 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms